CSBiology
NuGet publisher profile
Packages (112)
DynamicObj
F# library supporting Dynamic Objects including inheritance in functional style. Compatible with Fable javascript and python transpilation.
FSharpAux
Extensions, auxiliary functions and data structures for the F# programming language.
FSharpAux.IO
Package Description
FSharp.Stats
F#-first linear algebra, machine learning, fitting, signal processing, and statistical testing.
FSharpAux.Core
Extensions, auxiliary functions and data structures for the F# programming language.
FSharp.Plotly
A F# interactive charting library using plotly.js
FsSpreadsheet
Fable compliant Spreadsheet creation and manipulation in FSharp
ARCtrl.FileSystem
ARC helper functions for filesystem management.
ISADotNet
ISA compliant experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in the dotnet environment.
ARCtrl.CWL
ARC helper functions for Common workflow language.
ARCtrl.Contract
ARC helper functions for contracts management.
ARCtrl
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime agnostic contract systems.
ARCtrl.Core
ARC and ISA compliant experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in the dotnet environment.
BioFSharp
Open source bioinformatics and computational biology toolbox written in F#.
ISADotNet.XLSX
Excel File IO methods for ISA compliant experimental metadata toolkit in F#. The underlying datamodel can be directly read from and written to ISA-Json and ISA-Excel (ISATab format) files.
FsSpreadsheet.ExcelIO
Excel IO Extensions for the FsSpreadsheet Datamodel
ARCtrl.Spreadsheet
ARC and ISA xlsx compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-xlsx format.
ARCtrl.Json
ARC and ISA json compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-json format.
ARCtrl.ValidationPackages
ARC helper functions for Common workflow language.
ARCtrl.Yaml
ARC helper functions for Parsing YAML files.
ARCtrl.ROCrate
A data model of the ARC concept via it's RO Crate profile
BioFSharp.IO
Read/write functions for various biological file formats
ARCtrl.ISA
ARC and ISA compliant experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in the dotnet environment.
Graphoscope
A pragmatic approach to network science.
FsSpreadsheet.Net
Excel IO Extensions for the FsSpreadsheet Datamodel
ISADotNet.Fable
Fable compliant release for the ISA compliant experimental metadata toolkit in F#. Additionally to the compiled library, it is shipped with the uncompiled code.
ARCtrl.Javascript
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime agnostic contract systems.
ARCtrl.ISA.Spreadsheet
ARC and ISA xlsx compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-xlsx format.
ARCtrl.ISA.Json
ARC and ISA json compliant parser for experimental metadata toolkit in F#. This project is meant as an easy means to open, manipulate and save ISA (Investigation,Study,Assay) metadata files in isa-json format.
Nfdi4Plants.Fornax
Loaders, web-component integration and general structures for the Nfdi4Plants documentation
FSharpSpreadsheetML
FSharp wrapper for Open XML SDK, allowing Excel File reading and manipulation
BioFSharp.Stats
Statistical functions with a clear biological focus written in F#.
ISADotNet.Viz
Visualization extensions for ISA compliant experimental metadata toolkit in F#. This project helps visualize the experimental workflow described in the experiment metadata.
ARCExpect
Portable ARC validation package authoring, execution, result contracts, and output writers.
BioFSharp.Vis
Data visualization for bioinformatic purposes
BioFSharp.ML
Machine learning with BioFSharp and CNTK.Net.
MzIO
Generic data model to unify various readers and writers for different formats used in protein mass spectrometry
BioFSharp.BioContainers
Open source bioinformatics and computational biology toolbox written in F#.
FsSpreadsheet.Js
Excel IO Extensions for the FsSpreadsheet Datamodel in js environments using exceljs.
ISADotNet.QueryModel
Querying extensions for the ISA compliant experimental metadata toolkit in F#. This project is meant to allow easy, integrative and ontology guided access to experimental metadata.
FSharpGephiStreamer
FSharp functions for streaming graph data to gephi
FsSpreadsheet.CsvIO
CSV IO Extensions for the FsSpreadsheet Datamodel
BioFSharp.BioDB
API access to powerful popular bioinformatic databases
Nfdi4Plants.Fornax.Template
Create Fornax template with Nfdi4Plants.Fornax.
ExcelJS.Fable
Fable bindings for Office-js Excel
AVPRIndex
Type system and utils for the indexing backend of avpr.nfdi4plants.org
ARCtrl.Python
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime agnostic contract systems.
MzIO.Processing
Functionality to query data in the mzio model
BioFSharp.Parallel
GPU parallelized functions from BioFSharp
FSharp.FGL
Functional graph-library written in F#
ARCTokenization
F# library for tokenization of ARC metadata into controlled vocabulary tokens
JsonDSL
Small FSharp based DSL for writing literal json
BioFSharp.ImgP
Image recognition and analysis using wavelet transformations
MzIO.MzML
MzML Data Reader
MzIO.SQL
MzIO.SQLite Data Reader
ARCtrl.NET
Library for easy handling of ARC folders and files with file access in .NET.
FsSpreadsheet.Interactive
A .NET Interactive Kernel Extension for displaying the FsSpreadsheet datamodel.
ControlledVocabulary
A generic data model for representing controlled vocabularies
OBO.NET
An OBO file format parser, written in F#.
BioFSharp.Mz
BioFSharp.Mz - modular computational proteomics
LitXml
Small FSharp based DSL for writing literal xml
TMEA
TMEA (Thermodynamically Motivated Enrichment Analysis) is a thermodynamically motivated approach to gene set enrichment analysis
AVPRClient
.NET client library for avpr.nfdi4plants.org
arcIO.NET
Library for easy handling of ARC folders and files and reading and writing the ISAModel behind it.
AltaxoCore.Redist
Altaxo is a data processing and data plotting program. This is a redistribution of it's core classes via nuget under GPL3.
FsSpreadsheet.Py
Package Description
FsSpreadsheet.Exceljs
Excel IO Extensions for the FsSpreadsheet Datamodel in js environments using exceljs.
FSharp.Stats.Interactive
A .NET Interactive Kernel Extension for displaying FSharp.Stats types and objects.
FS3
Access S3 storages from F# via AWS SDK
imlp
imlp predicts iMTS-L propensity profiles of protein sequences of interest
ISADotNet.Validation
Validation functions for ISA compliant experimental metadata in F#.
OfficeJS.Fable
Fable bindings for Office-js
Cytoscape.NET
.NET interface for Cytoscape.js written in F#
WordJS.Fable
Fable bindings for Office-js Word
MzIO.Wiff
Sciex Data Reader
DeedleExtensions
Additional functions for handling Deedle frames.
FsOboParser
An OBO file format parser, written in F#.
JsonRef.NET
Functionality for resolving json-ld style json object references in .NET.
MzIO.Thermo
Thermo Data Reader
MzIO.Bruker
Bruker Data Reader
ARCValidationPackages
Package Description
ARCExpect.Core
Package Description
FsODE
Ordinary Differential Equation (ODE) Models in F#
FSharp.FGL.ArrayAdjacencyGraph
A graph data structure efficient for large sparse graph representation written in F#
ArcGraphModel.IO
Fsharp Library for tokenization of isa and cwl files into the ArcGraphModel
Slurmi
Tool for the creation of slurm jobscripts and workflows with F#.
FSharp.FGL.IO
Provides input and output methode to read and write edge/vertex list for functional graphs in F#
ArcGraphModel
Fsharp Library for working on ARCs as collection of controlled vocabulary token
FSharp.Stats.MSF
Statistical computations in F# using the Microsoft Solver Foundation
FsMath
FsMath is a lightweight maths library designed for modern F# workflows. It focuses on zero-friction interop with existing array-centric libraries ( FSharp.Stats, Math.NET Numerics, libtorch via TorchSharp, etc.) while giving you the performance head-room of SIMD-accelerated kernels and a clean, idiomatic F# API.
ProteomIQon.MzMLToMzLiteIonMobility
ProteomIQon.MzMLToMzLiteIonMobility - computational proteomics
FSharp.Plotly.WPF
A F# interactive charting library using plotly.js for WPF
BioFSharp.FileFormats.INSDC
Auto-generated C# type model for INSDC (International Nucleotide Sequence Database Collaboration) XML records, used by BioFSharp.IO.INSDC.
Ontology.NET
A library to work with ontologies and ontology-related file formats.
Cytoscape.NET.Interactive
A .NET Interactive Kernel Extension for displaying Cytoscape.NET graphs.
Ontology.NET.Extensions
A library to work with ontologies and ontology-related file formats.
BioFSharp.IO.INSDC
F# read/write support for INSDC (International Nucleotide Sequence Database Collaboration) XML records — BioProject, Study, Sample, Experiment, Run, Analysis, Submission, Receipt.
SigmaGraph.NET
A .NET interface for sigma.js graph visualisation written in F#
BioFSharp.Interactive
BioFSharp Formatting extensions for .NET Interactive.
SigmaGraph.NET.Interactive
A .NET Interactive Kernel Extension for displaying SigmaGraph.NET graphs.
ValidationPackage.Model
Portable domain model for ARC validation packages.
ValidationPackage.Codecs
Portable YAML frontmatter and JSON codecs for ARC validation packages.
BioFSharp.Visualization
Package Description
BioFSharp.INSDC.SQLite
SQLite-backed store for INSDC (International Nucleotide Sequence Database Collaboration) records — deconstructs BioProject, Study, BioSample, Experiment, and Run values into a normalized schema and reconstructs them on read.
TempClass
Project for fitting constrained smoothing splines to short time series affected by noise.
AVPRClient.Interop
Mappings between the generated AVPR client and the portable validation-package model.
BioFSharp.INSDC.Crawler
Crawls INSDC (International Nucleotide Sequence Database Collaboration) records from ENA — enumerates every run, experiment, sample, and study connected to a project accession and persists them via the BioFSharp.INSDC.SQLite store.
BioFSharp.INSDC.ArcIR
INSDC-specific F1 adapter that maps BioProject, Study, Sample, Experiment, Run, Analysis, Submission, and Receipt records into the target-neutral BioFSharp.ArcIR graph.
FsLLM
Package Description
OBO.NET.Graph
Package Description
DataHubClient
A polyglot client library for ARC DataHubs.
PolyglotSSSOM
A cross-runtime YAML metadata plus TSV implementation of SSSOM.